Colorectal cancer is the third most common form of cancer in the U.S. and can be roughly divided into sporadic, familial and hereditary types.
Tests generally appear in the order most useful for common clinical situations
| Test name: Mismatch Repair by IHC |
| ARUP #: 0049302 |
| Methodology: Qualitative Immunohistochemistry |
| Use: Preferred test to discriminate between sporadic and hereditary forms of colorectal cancer Surrogate test for MSI by PCR May help guide subsequent mutation analysis |
| Test name: KRAS Mutation Detection with Reflex to BRAF Codon 600 Mutation Detection |
| ARUP #: 2001932 |
| Methodology: Polymerase Chain Reaction/Pyrosequencing |
| Use: May indicate lack of responsiveness to anti-EGFR therapy Assay detects mutations in codons 12, 13, and 61 If KRAS is not detected, BRAF codon 600 Mutation Detection will be performed |
| Test name: NRAS Mutation Detection by Pyrosequencing |
| ARUP #: 2003123 |
| Methodology: Polymerase Chain Reaction/Pyrosequencing |
| Use: May indicate lack of responsiveness to anti-EGFR therapy |
| Test name: Familial Mutation, Targeted Sequencing |
| ARUP #: 2001961 |
| Methodology: Polymerase Chain Reaction/Sequencing |
| Use: Evaluate family members for a known family mutation A copy of a relative's laboratory test report documenting the gene and specific mutation(s) for which testing is requested must be submitted with the test order |
| Test name: HNPCC/Lynch Syndrome Deletion/Duplication |
| ARUP #: 2001728 |
| Methodology: Polymerase Chain Reaction/Multiplex Ligation-dependent Probe Amplification |
| Use: Evaluate family members for a known family mutation Detect mutations and large deletions in MLH1, MSH2, MSH6 or PMS2 genes |
| Limitations: For PMS2 testing, suspected deletions or duplication in exons 12-15 require sequencing to exclude pseudogene copy number variants |
| Test name: Familial Adenomatous Polyposis Panel: APC Sequencing, APC Deletion/Duplication, and MYH 2 Mutations |
| ARUP #: 2004915 |
| Methodology: Polymerase Chain Reaction/Sequencing/Multiplex Ligation-Dependent Probe Amplification |
| Use: Determine genetic basis for FAP Test at-risk family members with family history but no known familial mutation |
| Limitations: Do not use for identification of a known familial mutation |
| Test name: Familial Adenomatous Polyposis (APC) Sequencing |
| ARUP #: 2004863 |
| Methodology: Polymerase Chain Reaction/Sequencing |
| Use: Detect gene mutations related to APC-associated FAP |
| Limitations: Detects ~90% of APC gene mutations |
| Test name: Familial Adenomatous Polyposis (APC) Deletion/Duplication |
| ARUP #: 2004920 |
| Methodology: Polymerase Chain Reaction/Multiplex Ligation-Dependent Probe Amplification |
| Use: Detect APC deletions and duplications related to APC-associated FAP |
| Limitations: Detects APC gene mutations not identified by sequencing |
| Test name: MYH-Associated Polyposis (MYH) 2 Mutations |
| ARUP #: 2004911 |
| Methodology: Polymerase Chain Reaction/Sequencing |
| Use: Diagnostic or presymptomatic testing for MAP and MUTYH-associated polyposis |
| Limitations: Uncertain result means that a gene mutation was detected, it may be pathogenic or benign; clinician should rely on clinical findings and family history |
| Test name: Septin 9 (SEPT9), Methylated DNA Detection by Real-Time PCR |
| ARUP #: 2003243 |
| Methodology: Polymerase Chain Reaction |
| Use: Screen for colorectal cancer; positive result indicates possible increased risk |
| Limitations: Overall sensitivity (all stages) - 90% Sensitivity (stage I-II) - 87% Specificity - 89% Do not use as screening in patients with previous history of colorectal cancer or in patients with family history of early onset colorectal or hereditary colorectal cancer |
| Test name: Carcinoembryonic Antigen |
| ARUP #: 0080080 |
| Methodology: Quantitative Electrochemiluminescent Immunoassay |
| Use: Monitor tumor recurrence |
| Limitations: Not sensitive or specific enough for screening in the general population |
| Test name: Circulating Tumor Cell Count (Cell Search) |
| ARUP #: 0093399 |
| Methodology: Immunomagnetic separation/Immunofluorescence staining/Computer assisted analysis |
| Use: Use in metastatic tumors in conjunction with clinical data and imaging Monitor disease progression and response to therapy when comparing baseline values to serially monitor response and assess prognosis Prognostic marker that provides information about progression-free survival and overall survival Results should be interpreted with caution if specimens drawn within 7 days of doxorubicin therapy |
| Test name: CDX2 by Immunohistochemistry |
| ARUP #: 2003821 |
| Methodology: Immunohistochemistry |
| Use: Aid in histologic diagnosis of colorectal cancer Stained and returned to client pathologist for interpretation; consultation available if needed |
| Test name: Carcinoembryonic Antigen, Monoclonal (CEA M) by Immunohistochemistry |
| ARUP #: 2003824 |
| Methodology: Immunohistochemistry |
| Use: Aid in histologic diagnosis of colorectal cancer Stained and returned to client pathologist for interpretation; consultation available if needed |
| Test name: Carcinoembryonic Antigen, Polyclonal (CEA P) by Immunohistochemistry |
| ARUP #: 2003827 |
| Methodology: Immunohistochemistry |
| Use: Aid in histologic diagnosis of colorectal cancer Stained and returned to client pathologist for interpretation; consultation available if needed |
| Test name: Cytokeratin 20 (CK 20) by Immunohistochemistry |
| ARUP #: 2003848 |
| Methodology: Immunohistochemistry |
| Use: Aid in histologic diagnosis of colorectal cancer Stained and returned to client pathologist for interpretation; consultation available if needed |
| Test name: Muc-2 by Immunohistochemistry |
| ARUP #: 2004005 |
| Methodology: Immunohistochemistry |
| Use: Aid in histologic diagnosis of colorectal cancer Stained and returned to client pathologist for interpretation; consultation available if needed |
| Test name: Muc-4 by Immunohistochemistry |
| ARUP #: 2004008 |
| Methodology: Immunohistochemistry |
| Use: Aid in histologic diagnosis of colorectal cancer Stained and returned to client pathologist for interpretation; consultation available if needed |
| Test name: p21 (Waf1/Cip 1) by Immunohistochemistry |
| ARUP #: 2004067 |
| Methodology: Immunohistochemistry |
| Use: Aid in histologic diagnosis of colorectal cancer Stained and returned to client pathologist for interpretation; consultation available if needed |
| Test name: p16 by Immunohistochemistry |
| ARUP #: 2004064 |
| Methodology: Immunohistochemistry |
| Use: Prognostic indicator Stained and returned to client pathologist for interpretation; consultation available if needed |
| Test name: p27 (Kip1) by Immunohistochemistry |
| ARUP #: 2004070 |
| Methodology: Immunohistochemistry |
| Use: Prognostic indicator Stained and returned to client pathologist for interpretation; if consultation is required, contact anatomic pathology, surgical consult or hematopathology |
| Test name: p53 Tissue Assay, Paraffin |
| ARUP #: 0049250 |
| Methodology: Immunohistochemistry |
| Use: Prognostic indicator Stained and resulted by ARUP |
| Test name: HNPCC/Lynch Syndrome, Microsatellite Instability by PCR |
| ARUP #: 0051740 |
| Methodology: Polymerase Chain Reaction/Fragment Analysis |
| Comments: Discriminate between sporadic and hereditary forms of colorectal cancer |
| Test name: HNPCC/Lynch Syndrome (MLH1) Sequencing and Deletion/Duplication |
| ARUP #: 0051650 |
| Methodology: Polymerase Chain Reaction/Sequencing/Multiplex Ligation Probe Amplification |
| Comments: Detect mutations and large deletions in MLH1 gene |
| Test name: HNPCC/Lynch Syndrome (MSH2) Sequencing and Deletion/Duplication |
| ARUP #: 0051654 |
| Methodology: Polymerase Chain Reaction/Sequencing/Multiplex Ligation Probe Amplification |
| Comments: Detect mutations and large deletions in MSH2 gene |
| Test name: HNPCC/Lynch Syndrome (MSH6) Sequencing and Deletion/Duplication |
| ARUP #: 0051656 |
| Methodology: Polymerase Chain Reaction/Sequencing/Multiplex Ligation Probe Amplification |
| Comments: Detect mutations and large deletions in MSH6 gene |
| Test name: HNPCC/Lynch Syndrome (PMS2) Sequencing and Deletion/Duplication |
| ARUP #: 0051737 |
| Methodology: Polymerase Chain Reaction/Sequencing/Multiplex Ligation-dependent Probe Amplification |
| Comments: Detect mutations and large deletions in PMS2 gene Suspected deletions or duplications in exons 12-15 require additional sequencing to exclude pseudogene copy number variants |
| Test name: BRAF codon 600 Mutation Detection with Reflex to MLH1 Promoter Methylation |
| ARUP #: 0051750 |
| Methodology: Polymerase Chain Reaction/Pyrosequencing |
| Comments: Detect the presence of the V600E mutation in colorectal cancers If no BRAF mutation is detected, MLH1 promoter methylation is evaluated; evaluation can also help determine whether further workup for HNPCC is indicated |
| Test name: BRAF codon 600 Mutation Detection by Pyrosequencing |
| ARUP #: 2002498 |
| Methodology: Polymerase Chain Reaction/Pyrosequencing |
| Comments: Detect presence of V600E mutation in colorectal cancers |
| Test name: KRAS Mutation Detection |
| ARUP #: 0040248 |
| Methodology: Polymerase Chain Reaction/Pyrosequencing |
| Comments: May indicate lack of responsiveness to anti-EGFR therapy |
| Test name: 5-Fluorouracil Sensitivity (DYPD, TYMS and MTHFR) 8 Mutations |
| ARUP #: 2002420 |
| Methodology: Polymerase Chain Reaction/Primer Extension |
| Comments: Detect genetic variants influencing metabolism and action of 5-FU to identify people that may be at risk for drug toxicity |
| Test name: UDP Glucuronosyltransferase 1A1 (UGT1A1) Genotyping |
| ARUP #: 0051332 |
| Methodology: Polymerase Chain Reaction/Fragment Analysis |
| Comments: Detect irinotecan sensitivity in patients who will be administered these compounds |
| Test name: PIK3CA Mutation Detection |
| ARUP #: 2004510 |
| Methodology: Polymerase Chain Reaction/Pyrosequencing |
| Comments: Mutations may indicate lack of responsiveness to anti-EGFR therapy; may indicate tumor that will respond to drugs targeted at genes downstream of PIK3CA in the AKT/mTOR-signaling cascade Mutation associated with significant increase in colon cancer-specific mortality |